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Pritchard Lab Publications
2007 Adaptive Evolution of Conserved Noncoding Elements in Mammals. S.Y. Kim and J.K. Pritchard. 2007 PLoS Genet. 3(9):e147. [PDF] Inference of population structure using multilocus genotype data: dominant markers and null alleles. D. Falush, M. Stephens and J. K. Pritchard. 2007 Molecular Ecology Notes: [PDF] Overcoming the Winner's Curse: Estimating Penetrance Parameters from Case-Control Data. S. Zöllner and J. K. Pritchard. 2007 Am J Hum Genet. 80(4):605-15. [PDF] Adaptive drool in the gene pool. J. Novembre, J.K. Pritchard and G. Coop 2007 Nat Genet 39(10):1188-90. [News & Views on article by Perry et al.] [PDF] Convergent adaptation of human lactase persistence in Africa and Europe. S. A. Tishkoff, F. A. Reed , A. Ranciaro, B. F. Voight, C. C. Babbitt, J. S. Silverman, K. Powell, H. M. Mortensen, J. B. Hirbo, M. Osman, M. Ibrahim, S. A. Omar, G. Lema, T. B. Nyambo, J. Ghori, S. Bumpstead, J. K. Pritchard, G. A. Wray and P. Deloukas. 2007 Nat Genet. 39(1):31-40 [PDF] Live Hot, Die Young: Transmission Distortion in Recombination Hotspots. G. Coop and S. R. Myers. 2007 PLoS Genet. 3(3):e35 [PDF] An evolutionary view of human recombination. G. Coop and M. Przeworski. 2007 Nat Rev Genet. 8(1):23-34 [PDF] 2006 Sequencing and Analysis of Neanderthal Genomic DNA. JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Paabo, JK Pritchard, EM Rubin. 2006. Science. 314:1113-1118. [PDF] DF Conrad, M Jakobsson, G Coop, X Wen, JD Wall, NA Rosenberg, JK Pritchard. 2006. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics. 38:1251-60. [PDF] A Map of Recent Positive Selection in the Human Genome. B. F. Voight, S. Kudaravalli, X. Wen and J. K. Pritchard 2006. PLoS Biol 4(3): e72 [PDF], [Haplotter] A high-resolution survey of deletion polymorphism in the human genome. D. F. Conrad, T D. Andrews, N. P. Carter, M. E. Hurles and J. K. Pritchard 2006. Nature Genetics., 38:75-81. [PDF] Clonal origin and evolution of a transmissible cancer. C. Murgia, J. K. Pritchard, S.Y. Kim, A. Fassati, R.A. Weiss. Cell. 2006 126:477-87. [PDF] The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium. G. Hellenthal, J. K. Pritchard and M. Stephens 2006. Genetics, 172(3):2001-5. [PDF] 2005 Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. B. F. Voight, A. M. Adams, L. A. Frisse, Y. Qian, R. R. Hudson and A. Di Rienzo. PNAS, 102(51):18508-13. [PDF] Can a genome change its (hot)spots? G. Coop 2005. Trends in Ecology and Evolution, 20(12):643-645. [PDF] The signature of positive selection on standing genetic variation. M. Przeworski, G. Coop and J. D. Wall 2005. Evolution Int J Org Evolution, 59(11):2312-23. [PDF] Clines, clusters, and the effect of study design on the inference of human population structure. N. A. Rosenberg, S. Mahajan, S. Ramachandran, C. Zhao, J. K. Pritchard and M. W. Feldman 2005. PLoS Genetics,1(6):e70 [PDF] Confounding from Cryptic Relatedness in Case-Control Association Studies. B. F. Voight and J. K. Pritchard 2005. PLoS Genetics,1(3):e32 [PDF] Association mapping and fine mapping with TreeLD. S. Zöllner, X. Wen and J. K. Pritchard 2005 Bioinfomatics,21(14):3168-70 [PDF] Coalescent-based association mapping and fine mapping of complex trait loci S. Zöllner and J. K. Pritchard 2005. Genetics,169(2):1071-92 [PDF] 2004 Statistical Tests for Admixture Mapping with Case-Control and Cases-Only Data. G.Montana and J. K. Pritchard 2004. Am J. Hum Genet.,75:771-789 [PDF] Evidence for Extensive Transmission Distortion in the Human Genome. S. Zöllner, X. Wen, NA Hanchard, MA Herbert, C. Ober, and J.K. Pritchard 2004. Am J. Hum Genet., 74:62-72 [PDF] A coalescent-based approach for complex disease mapping. S. Zöllner and J. K. Pritchard 2004. Computational methods for SNPs and haplotype inference: Lecture notes in bioinformatics, 2983:124-130 2003 Comparative Linkage-Disequilibrium Analysis of the Beta-Globin Hotspot in Primates. J.D. Wall, L.A. Frisse, RR Hudson, and A Di Rienzo 2003. Am J. Hum. Genet., 73:1330-1340. [PDF] Informativeness of Genetic Markers for Inference of Ancestry. N.A. Rosenberg, L.M. Li, R. Ward, and J. K. Pritchard 2003. Am. J. Hum. Genet., 73:1402-1422 [PDF] Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. D. Falush, M. Stephens and J.K. Pritchard. 2003. Genetics, 164: 1567-1587. [PDF] Assessing the performance of the haplotype block model of linkage disequilibrium. J.D. Wall and J.K. Pritchard. 2003. Am J. Hum. Genet., 73: 502-516.[PDF] Haplotype blocks and linkage disequilibrium in the human genome. J.D. Wall and J.K. Pritchard. 2003. Nature Reviews Genetics, 4: 587-597. [PDF] Selection on human genes as revealed by comparisons to chimpanzee cDNA. Hellmann I, Zöllner S, Enard W, Ebersberger I, Nickel B, Paabo S. 2003. Genome Res. 13:831-7. [PDF] Traces of human migrations in Helicobacter pylori populations. D. Falush, T. Wirth, B. Linz, J.K. Pritchard and 14 others, 2003. Science, 299: 1582-1585. [PDF] Estimating ancestral population sizes and divergence times. J.D. Wall, 2003 Genetics 63:395-404. [PDF] 2002 The genetic structure of human populations. N.A. Rosenberg, J.K. Pritchard, J.L. Weber, H.M. Cann, K.K. Kidd, L.A. Zhivotovsky and M.W. Feldman, 2002. Science, 298: 2381-2385. (and technical comment, 2003) [PDF] The allelic architecture of human disease genes: common disease--common variant--or not? J.K. Pritchard and N.J. Cox, 2002. Human Molecular Genetics, 11:2417-2423 [PDF] Signatures of domain shuffling in the human genome. H. Kaessmann, S. Zöllner, A. Nekrutenko A, W.H. Li, 2003. Genome Research 12:1642-50. [PDF] 2001 Case-control studies of association in structured or admixed populations. J.K. Pritchard and P. Donnelly, 2001. Theor. Pop. Biol. 60:227-237 [Abstract] [PDF] Deconstructing maize population structure. J.K. Pritchard, 2001. Nature Genetics 28: 203-204 (N & V for article by Thornsberry et al) [PDF] Linkage disequilibrium in humans: models and data. J.K. Pritchard and M. Przeworski, 2001. Am. J. Hum. Genet. 69:1-14 [Abstract] [PDF] Are rare variants responsible for susceptibility to complex diseases? J.K. Pritchard, 2001. Am. J. Hum. Genet. 69:124-137 [Abstract] [PDF] Genetic diversity and introgression in the Scottish wildcat. M.A. Beaumont, E.M. Barratt, D. Gottelli, A.C. Kitchener, M.J. Daniels, J.K. Pritchard & M.W. Bruford, 2001. Molec. Ecol. 10:319-336. [Abstract], [PDF] Distinctive genetic signatures in the Libyan Jews. N. A. Rosenberg, E. Woolf, J. K. Pritchard, T. Schaap, D. Gefel, I. Shpirer, U. Lavi, B. Bonne'-Tamir, J. Hillel, and M.W. Feldman, 2001. PNAS 98:858-863. [Abstract], [PDF] 2000 Association mapping in structured populations. J.K. Pritchard, M. Stephens, N.A. Rosenberg and P. Donnelly, 2000. Am J. Hum Genet. 67:170-181. [Abstract], [PDF], [Software] Inference of population structure using multilocus genotype data. J.K. Pritchard, M. Stephens and P. J. Donnelly, 2000. Genetics 155: 945-959. [Abstract], [PDF], [Software]. Recent common ancestry of human Y chromsomes: Evidence from DNA sequence data. R. Thompson, J.K. Pritchard, P. Shen, P.J. Oefner and M.W. Feldman, 2000. PNAS 97:7360-7365. [Abstract]. [PDF], 1999. Use of unlinked genetic markers to detect population stratification in association studies. JK Pritchard and NA Rosenberg 1999. Am. J. of Hum. Gen. 65: 220-228. [Abstract], [PDF] Population growth of human Y chromosomes: a study of Y chromosome microsatellites. JK Pritchard, MT Seielstad, A Perez-Lezaun and MW Feldman 1999. Mol. Biol. Evol., 16:1791-1798. [Abstract], [PDF], [Data] Risky Business: sex and selfing in an unpredictable world. AJ Robson, CT Bergstrom and JK Pritchard 1999. J. Theor. Biol. 197: 541-556. [Abstract], [PDF] Mutation and migration in models of microsatellite evolution. MW Feldman, J Kumm, and JK Pritchard 1999. In ``Microsatellites: Evolution and Applications'', DG Goldstein and C Schloetterer, eds., pp 98-115. Oxford University Press, Oxford. [Abstract], [PDF] 1998 Germline bottlenecks and the evolutionary maintenance of mitochondrial genomes. CT Bergstrom and JK Pritchard 1998. Genetics 149: 2135-2146. [Abstract], [PDF] A test for heterogeneity of microsatellite variation. JK Pritchard and MW Feldman 1998. In ``Proceedings of the Trinational Workshop on Molecular Evolution", M. K. Uyenoyama and A. von Haeseler, eds. pp. 47-56. Duke University Publications Group, Durham, NC. [Abstract], [PDF] 1997 Polymorphism and divergence at a Drosophila melanogaster pseudogene locus. JK Pritchard and SW Schaeffer 1997. Genetics 147: 199-208. [Abstract], [PDF] 1996 Statistics for microsatellite variation based on coalescence. JK Pritchard and MW Feldman 1996. Theor. Pop. Biol. 50: 325-344. [Abstract], [PDF] Genetic data and the African origin of modern humans. JK Pritchard and MW Feldman 1996. Science 274: 1548. [Synopsis] 1994 Mathematical models of running. WG Pritchard and JK Pritchard 1994. American Scientist 82: 546-553. [Synopsis] |
